Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6O2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6O2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6O2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6O2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91125919 total, 68730 skipped (flags/unmapped)
Fragments: 45751099 total (45249452 tlen-paired, 4026 hash-paired, 604 singletons, 20712 discordant, 476305 orphans, 15950 too large [>5000 bp], 14947528 duplicates)
Reads: 95863936 total, 61255 skipped (flags/unmapped)
Fragments: 48137243 total (47596292 tlen-paired, 5140 hash-paired, 498 singletons, 17680 discordant, 517633 orphans, 23163 too large [>5000 bp], 15821302 duplicates)
Reads: 96660476 total, 57237 skipped (flags/unmapped)
Fragments: 48533739 total (48027665 tlen-paired, 2907 hash-paired, 584 singletons, 14664 discordant, 487919 orphans, 12132 too large [>5000 bp], 15561627 duplicates)
Reads: 106409970 total, 101917 skipped (flags/unmapped)
Fragments: 53620060 total (52158260 tlen-paired, 3664 hash-paired, 579 singletons, 286993 discordant, 1170564 orphans, 119538 too large [>5000 bp], 17588861 duplicates)