Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_OO-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OO-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OO-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OO-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 95402324 total, 69589 skipped (flags/unmapped)
Fragments: 47944657 total (47344274 tlen-paired, 3700 hash-paired, 589 singletons, 18206 discordant, 577888 orphans, 10949 too large [>5000 bp], 16979678 duplicates)
Reads: 101175841 total, 64466 skipped (flags/unmapped)
Fragments: 50845194 total (50200688 tlen-paired, 6699 hash-paired, 446 singletons, 15504 discordant, 621857 orphans, 21645 too large [>5000 bp], 18123501 duplicates)
Reads: 102171325 total, 59682 skipped (flags/unmapped)
Fragments: 51345967 total (50721194 tlen-paired, 3916 hash-paired, 562 singletons, 12448 discordant, 607847 orphans, 14059 too large [>5000 bp], 17768683 duplicates)
Reads: 112428215 total, 98621 skipped (flags/unmapped)
Fragments: 56776549 total (54844533 tlen-paired, 2830 hash-paired, 599 singletons, 386570 discordant, 1542017 orphans, 159556 too large [>5000 bp], 20159603 duplicates)