Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_OE-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OE-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OE-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OE-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55893088 total, 37158 skipped (flags/unmapped)
Fragments: 28083773 total (27750684 tlen-paired, 1638 hash-paired, 246 singletons, 9891 discordant, 321314 orphans, 4972 too large [>5000 bp], 8271722 duplicates)
Reads: 59856833 total, 32466 skipped (flags/unmapped)
Fragments: 30071573 total (29731105 tlen-paired, 1532 hash-paired, 315 singletons, 6833 discordant, 331788 orphans, 6662 too large [>5000 bp], 8660206 duplicates)
Reads: 66261863 total, 62422 skipped (flags/unmapped)
Fragments: 33446089 total (32358204 tlen-paired, 1630 hash-paired, 346 singletons, 213394 discordant, 872515 orphans, 90062 too large [>5000 bp], 9889194 duplicates)
Reads: 65106950 total, 36721 skipped (flags/unmapped)
Fragments: 32711762 total (32313217 tlen-paired, 2095 hash-paired, 317 singletons, 10125 discordant, 386008 orphans, 16515 too large [>5000 bp], 9672930 duplicates)