Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_b6q-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b6q-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b6q-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b6q-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65119401 total, 36630 skipped (flags/unmapped)
Fragments: 32682444 total (32376950 tlen-paired, 1882 hash-paired, 392 singletons, 7101 discordant, 296119 orphans, 7197 too large [>5000 bp], 8625447 duplicates)
Reads: 61062517 total, 46646 skipped (flags/unmapped)
Fragments: 30646615 total (30341515 tlen-paired, 2504 hash-paired, 360 singletons, 10555 discordant, 291681 orphans, 7341 too large [>5000 bp], 8264182 duplicates)
Reads: 71443539 total, 66212 skipped (flags/unmapped)
Fragments: 35991337 total (35048997 tlen-paired, 1533 hash-paired, 361 singletons, 181866 discordant, 758580 orphans, 76797 too large [>5000 bp], 9779613 duplicates)
Reads: 70642278 total, 42145 skipped (flags/unmapped)
Fragments: 35458835 total (35099581 tlen-paired, 3391 hash-paired, 316 singletons, 10852 discordant, 344695 orphans, 13737 too large [>5000 bp], 9628814 duplicates)