Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_OM-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OM-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OM-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OM-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80639687 total, 57889 skipped (flags/unmapped)
Fragments: 40470777 total (40077854 tlen-paired, 3485 hash-paired, 381 singletons, 13692 discordant, 375365 orphans, 7995 too large [>5000 bp], 12048580 duplicates)
Reads: 85742061 total, 47454 skipped (flags/unmapped)
Fragments: 43028526 total (42634042 tlen-paired, 3813 hash-paired, 455 singletons, 9624 discordant, 380592 orphans, 9301 too large [>5000 bp], 12631675 duplicates)
Reads: 93406717 total, 53800 skipped (flags/unmapped)
Fragments: 46881964 total (46411599 tlen-paired, 6509 hash-paired, 400 singletons, 14483 discordant, 448973 orphans, 19181 too large [>5000 bp], 14112033 duplicates)
Reads: 94491576 total, 86999 skipped (flags/unmapped)
Fragments: 47589828 total (46382661 tlen-paired, 3348 hash-paired, 437 singletons, 232356 discordant, 971026 orphans, 98192 too large [>5000 bp], 14345496 duplicates)