Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_862-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_862-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_862-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_862-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77467176 total, 54083 skipped (flags/unmapped)
Fragments: 38909156 total (38470046 tlen-paired, 2708 hash-paired, 458 singletons, 11549 discordant, 424395 orphans, 9817 too large [>5000 bp], 11605135 duplicates)
Reads: 76785645 total, 57479 skipped (flags/unmapped)
Fragments: 38567276 total (38103255 tlen-paired, 4352 hash-paired, 378 singletons, 13831 discordant, 445460 orphans, 19726 too large [>5000 bp], 11808619 duplicates)
Reads: 72607660 total, 64944 skipped (flags/unmapped)
Fragments: 36469426 total (36037267 tlen-paired, 3012 hash-paired, 377 singletons, 16439 discordant, 412331 orphans, 8286 too large [>5000 bp], 11092030 duplicates)
Reads: 84979260 total, 93603 skipped (flags/unmapped)
Fragments: 42856017 total (41560101 tlen-paired, 3063 hash-paired, 431 singletons, 255512 discordant, 1036910 orphans, 105482 too large [>5000 bp], 13085386 duplicates)