Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_S6H-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_S6H-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_S6H-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_S6H-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 100355106 total, 61595 skipped (flags/unmapped)
Fragments: 50471145 total (49783282 tlen-paired, 2298 hash-paired, 603 singletons, 12374 discordant, 672588 orphans, 12206 too large [>5000 bp], 18398072 duplicates)
Reads: 94916066 total, 73318 skipped (flags/unmapped)
Fragments: 47726974 total (47069418 tlen-paired, 3108 hash-paired, 544 singletons, 17936 discordant, 635968 orphans, 12656 too large [>5000 bp], 17735302 duplicates)
Reads: 100007492 total, 66183 skipped (flags/unmapped)
Fragments: 50291656 total (49572256 tlen-paired, 4210 hash-paired, 452 singletons, 15569 discordant, 699169 orphans, 28809 too large [>5000 bp], 18788964 duplicates)
Reads: 111997275 total, 115810 skipped (flags/unmapped)
Fragments: 56622788 total (54463232 tlen-paired, 2629 hash-paired, 605 singletons, 435270 discordant, 1721052 orphans, 178773 too large [>5000 bp], 21036202 duplicates)