Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_J1R-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_J1R-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_J1R-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai


[W::hts_idx_load3] The index file is older than the data file: 1029_J1R-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73970420 total, 42624 skipped (flags/unmapped)
Fragments: 37181943 total (36719338 tlen-paired, 1804 hash-paired, 399 singletons, 8171 discordant, 452231 orphans, 8270 too large [>5000 bp], 11596376 duplicates)
Reads: 70053603 total, 48544 skipped (flags/unmapped)
Fragments: 35203411 total (34768104 tlen-paired, 2520 hash-paired, 466 singletons, 11102 discordant, 421219 orphans, 9961 too large [>5000 bp], 11241906 duplicates)
Reads: 80894820 total, 46804 skipped (flags/unmapped)
Fragments: 40657372 total (40137854 tlen-paired, 3217 hash-paired, 378 singletons, 11755 discordant, 504168 orphans, 18909 too large [>5000 bp], 13003281 duplicates)
Reads: 82316245 total, 73904 skipped (flags/unmapped)
Fragments: 41599117 total (40114192 tlen-paired, 1914 hash-paired, 453 singletons, 292386 discordant, 1190172 orphans, 117366 too large [>5000 bp], 13228017 duplicates)