Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1047_M8-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1047_M8-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1047_M8-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_M8-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80775132 total, 59876 skipped (flags/unmapped)
Fragments: 40553677 total (40127405 tlen-paired, 3821 hash-paired, 511 singletons, 13997 discordant, 407943 orphans, 8178 too large [>5000 bp], 12906765 duplicates)
Reads: 84848698 total, 47607 skipped (flags/unmapped)
Fragments: 42598892 total (42172615 tlen-paired, 2326 hash-paired, 579 singletons, 9184 discordant, 414188 orphans, 9037 too large [>5000 bp], 13338735 duplicates)
Reads: 93516169 total, 55162 skipped (flags/unmapped)
Fragments: 46948255 total (46452657 tlen-paired, 4840 hash-paired, 455 singletons, 13903 discordant, 476400 orphans, 20676 too large [>5000 bp], 15056440 duplicates)
Reads: 94591218 total, 86330 skipped (flags/unmapped)
Fragments: 47680678 total (46343492 tlen-paired, 2557 hash-paired, 448 singletons, 258881 discordant, 1075300 orphans, 109640 too large [>5000 bp], 15244529 duplicates)