Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_N2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_N2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_N2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_N2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88716129 total, 66954 skipped (flags/unmapped)
Fragments: 44528337 total (44081552 tlen-paired, 3503 hash-paired, 517 singletons, 15245 discordant, 427520 orphans, 10269 too large [>5000 bp], 14521781 duplicates)
Reads: 94978769 total, 55929 skipped (flags/unmapped)
Fragments: 47670246 total (47215832 tlen-paired, 3515 hash-paired, 547 singletons, 10413 discordant, 439939 orphans, 11417 too large [>5000 bp], 15267367 duplicates)
Reads: 94000304 total, 59798 skipped (flags/unmapped)
Fragments: 47186801 total (46688873 tlen-paired, 4614 hash-paired, 465 singletons, 13118 discordant, 479731 orphans, 23550 too large [>5000 bp], 15493829 duplicates)
Reads: 104643219 total, 100939 skipped (flags/unmapped)
Fragments: 52703253 total (51327210 tlen-paired, 4348 hash-paired, 563 singletons, 273913 discordant, 1097219 orphans, 116778 too large [>5000 bp], 17284681 duplicates)