Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_e6r-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e6r-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e6r-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e6r-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88513479 total, 68635 skipped (flags/unmapped)
Fragments: 44405963 total (43999004 tlen-paired, 4617 hash-paired, 454 singletons, 16432 discordant, 385456 orphans, 9414 too large [>5000 bp], 13764970 duplicates)
Reads: 94302631 total, 56655 skipped (flags/unmapped)
Fragments: 47307478 total (46901759 tlen-paired, 3645 hash-paired, 635 singletons, 11228 discordant, 390211 orphans, 10933 too large [>5000 bp], 14485567 duplicates)
Reads: 102663742 total, 63320 skipped (flags/unmapped)
Fragments: 51506624 total (51043138 tlen-paired, 4638 hash-paired, 455 singletons, 16502 discordant, 441891 orphans, 14760 too large [>5000 bp], 16138146 duplicates)
Reads: 103526653 total, 98351 skipped (flags/unmapped)
Fragments: 52101887 total (50897473 tlen-paired, 3917 hash-paired, 573 singletons, 231443 discordant, 968481 orphans, 96791 too large [>5000 bp], 16340672 duplicates)