Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bnZ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bnZ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bnZ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bnZ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74319242 total, 45241 skipped (flags/unmapped)
Fragments: 37291174 total (36954270 tlen-paired, 2309 hash-paired, 448 singletons, 7378 discordant, 326769 orphans, 9435 too large [>5000 bp], 11085139 duplicates)
Reads: 70312358 total, 52370 skipped (flags/unmapped)
Fragments: 35283239 total (34946669 tlen-paired, 2967 hash-paired, 424 singletons, 10723 discordant, 322456 orphans, 8195 too large [>5000 bp], 10708892 duplicates)
Reads: 82817211 total, 81363 skipped (flags/unmapped)
Fragments: 41704111 total (40649409 tlen-paired, 2470 hash-paired, 410 singletons, 206104 discordant, 845718 orphans, 86877 too large [>5000 bp], 12667452 duplicates)
Reads: 81030053 total, 51734 skipped (flags/unmapped)
Fragments: 40663351 total (40260182 tlen-paired, 5402 hash-paired, 368 singletons, 11356 discordant, 386043 orphans, 19014 too large [>5000 bp], 12376859 duplicates)