Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_UY6-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_UY6-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_UY6-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_UY6-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69503545 total, 53845 skipped (flags/unmapped)
Fragments: 34885040 total (34534521 tlen-paired, 2555 hash-paired, 432 singletons, 12954 discordant, 334578 orphans, 7315 too large [>5000 bp], 11203536 duplicates)
Reads: 73510058 total, 47283 skipped (flags/unmapped)
Fragments: 36894612 total (36537383 tlen-paired, 3172 hash-paired, 493 singletons, 8696 discordant, 344868 orphans, 9456 too large [>5000 bp], 11666219 duplicates)
Reads: 80520689 total, 50013 skipped (flags/unmapped)
Fragments: 40412788 total (39999195 tlen-paired, 5389 hash-paired, 412 singletons, 13116 discordant, 394676 orphans, 20094 too large [>5000 bp], 13093309 duplicates)
Reads: 81354032 total, 82518 skipped (flags/unmapped)
Fragments: 40981783 total (39905072 tlen-paired, 2661 hash-paired, 437 singletons, 208422 discordant, 865191 orphans, 86788 too large [>5000 bp], 13266669 duplicates)