Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ8B-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ8B-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ8B-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ8B-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96005133 total, 75171 skipped (flags/unmapped)
Fragments: 48250157 total (47636640 tlen-paired, 3314 hash-paired, 484 singletons, 16235 discordant, 593484 orphans, 11808 too large [>5000 bp], 17684073 duplicates)
Reads: 101687188 total, 64124 skipped (flags/unmapped)
Fragments: 51105303 total (50479024 tlen-paired, 2926 hash-paired, 651 singletons, 11191 discordant, 611511 orphans, 12310 too large [>5000 bp], 18395330 duplicates)
Reads: 111136669 total, 69638 skipped (flags/unmapped)
Fragments: 55866411 total (55144249 tlen-paired, 5329 hash-paired, 530 singletons, 16186 discordant, 700117 orphans, 17428 too large [>5000 bp], 20608568 duplicates)
Reads: 113115397 total, 122075 skipped (flags/unmapped)
Fragments: 57149940 total (55100439 tlen-paired, 2342 hash-paired, 610 singletons, 403551 discordant, 1642998 orphans, 168525 too large [>5000 bp], 20930063 duplicates)