Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_GZ1-N1-BDNA-01_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_GZ1-N1-BDNA-01_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_GZ1-N1-BDNA-01_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_GZ1-N1-BDNA-01_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66541672 total, 40374 skipped (flags/unmapped)
Fragments: 33424443 total (33049829 tlen-paired, 2594 hash-paired, 444 singletons, 7392 discordant, 364184 orphans, 8520 too large [>5000 bp], 10266560 duplicates)
Reads: 66266783 total, 42515 skipped (flags/unmapped)
Fragments: 33290040 total (32886851 tlen-paired, 2982 hash-paired, 357 singletons, 9499 discordant, 390351 orphans, 17448 too large [>5000 bp], 10483652 duplicates)
Reads: 62818212 total, 45491 skipped (flags/unmapped)
Fragments: 31554117 total (31187936 tlen-paired, 2362 hash-paired, 456 singletons, 11042 discordant, 352321 orphans, 8632 too large [>5000 bp], 9941733 duplicates)
Reads: 73578467 total, 69836 skipped (flags/unmapped)
Fragments: 37122344 total (35957163 tlen-paired, 2322 hash-paired, 468 singletons, 233056 discordant, 929335 orphans, 96873 too large [>5000 bp], 11671964 duplicates)