Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_00K-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_00K-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_00K-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_00K-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71466395 total, 57420 skipped (flags/unmapped)
Fragments: 35873479 total (35499768 tlen-paired, 2592 hash-paired, 440 singletons, 13840 discordant, 356839 orphans, 9648 too large [>5000 bp], 10094827 duplicates)
Reads: 75556207 total, 53350 skipped (flags/unmapped)
Fragments: 37929630 total (37523205 tlen-paired, 3293 hash-paired, 439 singletons, 11899 discordant, 390794 orphans, 17415 too large [>5000 bp], 10767059 duplicates)
Reads: 76924272 total, 50092 skipped (flags/unmapped)
Fragments: 38611396 total (38231468 tlen-paired, 2833 hash-paired, 562 singletons, 9887 discordant, 366646 orphans, 9298 too large [>5000 bp], 10612387 duplicates)
Reads: 83740519 total, 84209 skipped (flags/unmapped)
Fragments: 42184462 total (41063574 tlen-paired, 1902 hash-paired, 514 singletons, 220214 discordant, 898258 orphans, 93079 too large [>5000 bp], 11931156 duplicates)