Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cIW-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cIW-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cIW-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cIW-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90110220 total, 69060 skipped (flags/unmapped)
Fragments: 45303690 total (44696470 tlen-paired, 3981 hash-paired, 509 singletons, 14619 discordant, 588111 orphans, 11200 too large [>5000 bp], 16196681 duplicates)
Reads: 95926191 total, 57985 skipped (flags/unmapped)
Fragments: 48231766 total (47602111 tlen-paired, 2842 hash-paired, 701 singletons, 10099 discordant, 616013 orphans, 10694 too large [>5000 bp], 16857910 duplicates)
Reads: 104680091 total, 67081 skipped (flags/unmapped)
Fragments: 52631349 total (51897371 tlen-paired, 5916 hash-paired, 519 singletons, 15014 discordant, 712529 orphans, 31680 too large [>5000 bp], 18863550 duplicates)
Reads: 106878211 total, 102971 skipped (flags/unmapped)
Fragments: 54047391 total (51974440 tlen-paired, 2786 hash-paired, 591 singletons, 409979 discordant, 1659595 orphans, 170322 too large [>5000 bp], 19290238 duplicates)