Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4S5-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4S5-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4S5-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4S5-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84010085 total, 68904 skipped (flags/unmapped)
Fragments: 42178006 total (41722659 tlen-paired, 4068 hash-paired, 416 singletons, 15916 discordant, 434947 orphans, 10266 too large [>5000 bp], 14190479 duplicates)
Reads: 88932781 total, 63120 skipped (flags/unmapped)
Fragments: 44647896 total (44183703 tlen-paired, 3602 hash-paired, 557 singletons, 11138 discordant, 448896 orphans, 11661 too large [>5000 bp], 14781463 duplicates)
Reads: 97293640 total, 67218 skipped (flags/unmapped)
Fragments: 48847300 total (48307517 tlen-paired, 3802 hash-paired, 499 singletons, 16569 discordant, 518913 orphans, 25617 too large [>5000 bp], 16564693 duplicates)
Reads: 98351814 total, 108217 skipped (flags/unmapped)
Fragments: 49576800 total (48162427 tlen-paired, 4055 hash-paired, 556 singletons, 273483 discordant, 1136279 orphans, 113416 too large [>5000 bp], 16771224 duplicates)