Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IYM-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IYM-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IYM-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IYM-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 102566221 total, 69719 skipped (flags/unmapped)
Fragments: 51535815 total (50917526 tlen-paired, 3474 hash-paired, 532 singletons, 19211 discordant, 595072 orphans, 10238 too large [>5000 bp], 17370197 duplicates)
Reads: 109891156 total, 63279 skipped (flags/unmapped)
Fragments: 55209607 total (54574083 tlen-paired, 3763 hash-paired, 698 singletons, 12766 discordant, 618297 orphans, 13829 too large [>5000 bp], 18308378 duplicates)
Reads: 119266111 total, 68853 skipped (flags/unmapped)
Fragments: 59929314 total (59209996 tlen-paired, 4868 hash-paired, 591 singletons, 19354 discordant, 694505 orphans, 16863 too large [>5000 bp], 20371447 duplicates)
Reads: 121652573 total, 109326 skipped (flags/unmapped)
Fragments: 61415525 total (59407145 tlen-paired, 2467 hash-paired, 593 singletons, 393470 discordant, 1611850 orphans, 162320 too large [>5000 bp], 20792437 duplicates)