Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BKSJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BKSJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BKSJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BKSJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68071583 total, 41397 skipped (flags/unmapped)
Fragments: 34186517 total (33816981 tlen-paired, 2538 hash-paired, 454 singletons, 7940 discordant, 358604 orphans, 8105 too large [>5000 bp], 10008545 duplicates)
Reads: 64053067 total, 49440 skipped (flags/unmapped)
Fragments: 32165826 total (31805115 tlen-paired, 2347 hash-paired, 312 singletons, 11361 discordant, 346691 orphans, 9489 too large [>5000 bp], 9614353 duplicates)
Reads: 73916592 total, 47869 skipped (flags/unmapped)
Fragments: 37121782 total (36681887 tlen-paired, 5768 hash-paired, 382 singletons, 12014 discordant, 421731 orphans, 23636 too large [>5000 bp], 11139629 duplicates)
Reads: 75083692 total, 78163 skipped (flags/unmapped)
Fragments: 37871852 total (36716422 tlen-paired, 3113 hash-paired, 431 singletons, 224836 discordant, 927050 orphans, 94653 too large [>5000 bp], 11315776 duplicates)