Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_LS-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_LS-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_LS-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_LS-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78493754 total, 57440 skipped (flags/unmapped)
Fragments: 39405283 total (38994571 tlen-paired, 3258 hash-paired, 430 singletons, 13406 discordant, 393618 orphans, 9898 too large [>5000 bp], 12167721 duplicates)
Reads: 83507970 total, 48863 skipped (flags/unmapped)
Fragments: 41922794 total (41506786 tlen-paired, 3025 hash-paired, 520 singletons, 8736 discordant, 403727 orphans, 8883 too large [>5000 bp], 12722317 duplicates)
Reads: 90857798 total, 54627 skipped (flags/unmapped)
Fragments: 45615349 total (45123478 tlen-paired, 4063 hash-paired, 466 singletons, 13449 discordant, 473893 orphans, 23416 too large [>5000 bp], 14194142 duplicates)
Reads: 92274529 total, 89107 skipped (flags/unmapped)
Fragments: 46511626 total (45198841 tlen-paired, 3016 hash-paired, 515 singletons, 256717 discordant, 1052537 orphans, 107611 too large [>5000 bp], 14445242 duplicates)