Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3IL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3IL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3IL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3IL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79989285 total, 47077 skipped (flags/unmapped)
Fragments: 40142291 total (39767371 tlen-paired, 2587 hash-paired, 526 singletons, 9937 discordant, 361870 orphans, 10011 too large [>5000 bp], 11468994 duplicates)
Reads: 78796367 total, 50389 skipped (flags/unmapped)
Fragments: 39543379 total (39156042 tlen-paired, 4945 hash-paired, 459 singletons, 12030 discordant, 369903 orphans, 14791 too large [>5000 bp], 11594176 duplicates)
Reads: 74715794 total, 57202 skipped (flags/unmapped)
Fragments: 37495054 total (37125409 tlen-paired, 4044 hash-paired, 541 singletons, 14593 discordant, 350467 orphans, 9746 too large [>5000 bp], 10878560 duplicates)
Reads: 86874235 total, 85220 skipped (flags/unmapped)
Fragments: 43741214 total (42656200 tlen-paired, 3259 hash-paired, 517 singletons, 212480 discordant, 868758 orphans, 87931 too large [>5000 bp], 12795904 duplicates)