Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GI6-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GI6-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GI6-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GI6-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75503012 total, 54398 skipped (flags/unmapped)
Fragments: 37881657 total (37534589 tlen-paired, 3903 hash-paired, 568 singletons, 13441 discordant, 329156 orphans, 7512 too large [>5000 bp], 11582855 duplicates)
Reads: 80591698 total, 44899 skipped (flags/unmapped)
Fragments: 40435100 total (40082201 tlen-paired, 3023 hash-paired, 503 singletons, 9179 discordant, 340194 orphans, 8648 too large [>5000 bp], 12087354 duplicates)
Reads: 79583794 total, 49869 skipped (flags/unmapped)
Fragments: 39931466 total (39545542 tlen-paired, 4820 hash-paired, 409 singletons, 11693 discordant, 369002 orphans, 20202 too large [>5000 bp], 12230458 duplicates)
Reads: 87953889 total, 83444 skipped (flags/unmapped)
Fragments: 44260937 total (43232611 tlen-paired, 2326 hash-paired, 478 singletons, 201771 discordant, 823751 orphans, 86400 too large [>5000 bp], 13583375 duplicates)