Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_54L-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_54L-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_54L-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_54L-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83744181 total, 58394 skipped (flags/unmapped)
Fragments: 42018158 total (41633957 tlen-paired, 2799 hash-paired, 457 singletons, 12155 discordant, 368790 orphans, 9359 too large [>5000 bp], 13595339 duplicates)
Reads: 89169835 total, 49560 skipped (flags/unmapped)
Fragments: 44741572 total (44345946 tlen-paired, 2661 hash-paired, 494 singletons, 8418 discordant, 384053 orphans, 10839 too large [>5000 bp], 14143883 duplicates)
Reads: 87634558 total, 53928 skipped (flags/unmapped)
Fragments: 43973858 total (43545164 tlen-paired, 3502 hash-paired, 421 singletons, 10778 discordant, 413993 orphans, 23664 too large [>5000 bp], 14319044 duplicates)
Reads: 98049970 total, 95075 skipped (flags/unmapped)
Fragments: 49354337 total (48146717 tlen-paired, 3842 hash-paired, 562 singletons, 239983 discordant, 963233 orphans, 105008 too large [>5000 bp], 16000132 duplicates)