Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_KUX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_KUX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_KUX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_KUX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72741914 total, 52096 skipped (flags/unmapped)
Fragments: 36492297 total (36166233 tlen-paired, 2962 hash-paired, 405 singletons, 12440 discordant, 310257 orphans, 7943 too large [>5000 bp], 10678583 duplicates)
Reads: 77311866 total, 43428 skipped (flags/unmapped)
Fragments: 38784334 total (38454502 tlen-paired, 2997 hash-paired, 502 singletons, 8327 discordant, 318006 orphans, 9139 too large [>5000 bp], 11166158 duplicates)
Reads: 84731700 total, 80378 skipped (flags/unmapped)
Fragments: 42644825 total (41656681 tlen-paired, 2288 hash-paired, 415 singletons, 189240 discordant, 796201 orphans, 79144 too large [>5000 bp], 12565612 duplicates)
Reads: 84518209 total, 49295 skipped (flags/unmapped)
Fragments: 42399155 total (42029533 tlen-paired, 2336 hash-paired, 414 singletons, 12060 discordant, 354812 orphans, 12915 too large [>5000 bp], 12501796 duplicates)