Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IT8-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IT8-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IT8-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IT8-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73335872 total, 57897 skipped (flags/unmapped)
Fragments: 36779924 total (36464352 tlen-paired, 2567 hash-paired, 455 singletons, 11798 discordant, 300752 orphans, 9667 too large [>5000 bp], 11246040 duplicates)
Reads: 78730420 total, 51808 skipped (flags/unmapped)
Fragments: 39487074 total (39159482 tlen-paired, 3643 hash-paired, 474 singletons, 8161 discordant, 315314 orphans, 10126 too large [>5000 bp], 11808154 duplicates)
Reads: 77617924 total, 53680 skipped (flags/unmapped)
Fragments: 38932197 total (38598763 tlen-paired, 4686 hash-paired, 398 singletons, 9566 discordant, 318784 orphans, 9516 too large [>5000 bp], 11939931 duplicates)
Reads: 85451887 total, 86414 skipped (flags/unmapped)
Fragments: 42985037 total (42038625 tlen-paired, 2272 hash-paired, 495 singletons, 184639 discordant, 759006 orphans, 77450 too large [>5000 bp], 13165044 duplicates)