Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_KK-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_KK-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_KK-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_KK-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 98281755 total, 74963 skipped (flags/unmapped)
Fragments: 49325821 total (48835987 tlen-paired, 3633 hash-paired, 545 singletons, 18241 discordant, 467415 orphans, 11555 too large [>5000 bp], 15720778 duplicates)
Reads: 105122820 total, 65390 skipped (flags/unmapped)
Fragments: 52753629 total (52259656 tlen-paired, 5193 hash-paired, 617 singletons, 12502 discordant, 475661 orphans, 13225 too large [>5000 bp], 16529320 duplicates)
Reads: 113900617 total, 69570 skipped (flags/unmapped)
Fragments: 57169368 total (56584409 tlen-paired, 5259 hash-paired, 535 singletons, 18853 discordant, 560312 orphans, 26579 too large [>5000 bp], 18426404 duplicates)
Reads: 115234916 total, 112584 skipped (flags/unmapped)
Fragments: 58039453 total (56553804 tlen-paired, 3805 hash-paired, 710 singletons, 284566 discordant, 1196568 orphans, 120352 too large [>5000 bp], 18696497 duplicates)