Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_YGP-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YGP-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YGP-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YGP-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66549994 total, 48866 skipped (flags/unmapped)
Fragments: 33400901 total (33066718 tlen-paired, 2553 hash-paired, 298 singletons, 11678 discordant, 319654 orphans, 9639 too large [>5000 bp], 9998245 duplicates)
Reads: 69956606 total, 37820 skipped (flags/unmapped)
Fragments: 35115025 total (34778063 tlen-paired, 1728 hash-paired, 386 singletons, 7932 discordant, 326916 orphans, 8019 too large [>5000 bp], 10296523 duplicates)
Reads: 77633063 total, 72523 skipped (flags/unmapped)
Fragments: 39111396 total (38072823 tlen-paired, 3103 hash-paired, 367 singletons, 201518 discordant, 833585 orphans, 85850 too large [>5000 bp], 11729777 duplicates)
Reads: 76535928 total, 43085 skipped (flags/unmapped)
Fragments: 38420437 total (38017347 tlen-paired, 2515 hash-paired, 340 singletons, 11798 discordant, 388437 orphans, 20373 too large [>5000 bp], 11523592 duplicates)