Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_70I-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_70I-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_70I-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_70I-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75577222 total, 57331 skipped (flags/unmapped)
Fragments: 37926527 total (37559455 tlen-paired, 3682 hash-paired, 395 singletons, 11939 discordant, 351056 orphans, 9144 too large [>5000 bp], 11242456 duplicates)
Reads: 88331276 total, 85061 skipped (flags/unmapped)
Fragments: 44495489 total (43329097 tlen-paired, 2880 hash-paired, 418 singletons, 226189 discordant, 936905 orphans, 96280 too large [>5000 bp], 13264411 duplicates)
Reads: 80534041 total, 44200 skipped (flags/unmapped)
Fragments: 40418640 total (40045277 tlen-paired, 2063 hash-paired, 457 singletons, 7915 discordant, 362928 orphans, 7973 too large [>5000 bp], 11767045 duplicates)
Reads: 87245217 total, 50196 skipped (flags/unmapped)
Fragments: 43790799 total (43352299 tlen-paired, 5987 hash-paired, 412 singletons, 12240 discordant, 419861 orphans, 16848 too large [>5000 bp], 13075716 duplicates)