Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1173_SK8-N1-BDNA-01_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1173_SK8-N1-BDNA-01_B23MHTGLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1173_SK8-N1-BDNA-01_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_SK8-N1-BDNA-01_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 114439825 total, 91515 skipped (flags/unmapped)
Fragments: 57408928 total (56881510 tlen-paired, 5403 hash-paired, 619 singletons, 21877 discordant, 499519 orphans, 15296 too large [>5000 bp], 19149527 duplicates)
Reads: 120834863 total, 83976 skipped (flags/unmapped)
Fragments: 60623181 total (60049654 tlen-paired, 6364 hash-paired, 653 singletons, 18366 discordant, 548144 orphans, 26661 too large [>5000 bp], 20407342 duplicates)
Reads: 122592189 total, 83063 skipped (flags/unmapped)
Fragments: 61497013 total (60957835 tlen-paired, 5532 hash-paired, 781 singletons, 15298 discordant, 517567 orphans, 16724 too large [>5000 bp], 20155794 duplicates)
Reads: 133804353 total, 126790 skipped (flags/unmapped)
Fragments: 67329500 total (65798757 tlen-paired, 3658 hash-paired, 710 singletons, 299698 discordant, 1226677 orphans, 122975 too large [>5000 bp], 22662225 duplicates)