Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dLs-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dLs-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dLs-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dLs-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87142228 total, 71425 skipped (flags/unmapped)
Fragments: 43781936 total (43248127 tlen-paired, 4954 hash-paired, 472 singletons, 14476 discordant, 513907 orphans, 10655 too large [>5000 bp], 15415534 duplicates)
Reads: 92144115 total, 60396 skipped (flags/unmapped)
Fragments: 46296422 total (45749085 tlen-paired, 2823 hash-paired, 519 singletons, 10243 discordant, 533752 orphans, 12573 too large [>5000 bp], 15989920 duplicates)
Reads: 100921791 total, 64266 skipped (flags/unmapped)
Fragments: 50712863 total (50074746 tlen-paired, 4677 hash-paired, 459 singletons, 16037 discordant, 616944 orphans, 24601 too large [>5000 bp], 17952392 duplicates)
Reads: 102907443 total, 104682 skipped (flags/unmapped)
Fragments: 51961851 total (50199274 tlen-paired, 3535 hash-paired, 492 singletons, 347641 discordant, 1410909 orphans, 145230 too large [>5000 bp], 18307617 duplicates)