Count mode: frac
Count mode: frac
[W::hts_idx_load3] Count mode: frac
The index file is older than the data file: 1029_92F-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_92F-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_92F-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_92F-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93959297 total, 54626 skipped (flags/unmapped)
Fragments: 47142151 total (46731100 tlen-paired, 2677 hash-paired, 574 singletons, 9309 discordant, 398491 orphans, 9717 too large [>5000 bp], 14676081 duplicates)
Reads: 88941174 total, 64577 skipped (flags/unmapped)
Fragments: 44625860 total (44215389 tlen-paired, 3444 hash-paired, 511 singletons, 13460 discordant, 393056 orphans, 9222 too large [>5000 bp], 14162443 duplicates)
Reads: 102870643 total, 60768 skipped (flags/unmapped)
Fragments: 51617919 total (51124891 tlen-paired, 5666 hash-paired, 538 singletons, 13727 discordant, 473097 orphans, 23836 too large [>5000 bp], 16468197 duplicates)
Reads: 103520909 total, 96693 skipped (flags/unmapped)
Fragments: 52122679 total (50843000 tlen-paired, 2607 hash-paired, 581 singletons, 247496 discordant, 1028995 orphans, 104217 too large [>5000 bp], 16638313 duplicates)