Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_R3S-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1029_R3S-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_R3S-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_R3S-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59612278 total, 45692 skipped (flags/unmapped)
Fragments: 29933188 total (29604166 tlen-paired, 2800 hash-paired, 355 singletons, 11282 discordant, 314585 orphans, 7575 too large [>5000 bp], 8134939 duplicates)
Reads: 64232754 total, 38015 skipped (flags/unmapped)
Fragments: 32254100 total (31916770 tlen-paired, 1872 hash-paired, 392 singletons, 7585 discordant, 327481 orphans, 7206 too large [>5000 bp], 8593325 duplicates)
Reads: 63119575 total, 41635 skipped (flags/unmapped)
Fragments: 31697172 total (31332455 tlen-paired, 2740 hash-paired, 346 singletons, 10031 discordant, 351600 orphans, 17771 too large [>5000 bp], 8653658 duplicates)
Reads: 69792355 total, 70255 skipped (flags/unmapped)
Fragments: 35182574 total (34165624 tlen-paired, 2019 hash-paired, 363 singletons, 201061 discordant, 813507 orphans, 85411 too large [>5000 bp], 9589930 duplicates)