Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cKj-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cKj-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cKj-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_cKj-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65615838 total, 53244 skipped (flags/unmapped)
Fragments: 32954065 total (32574031 tlen-paired, 3202 hash-paired, 375 singletons, 12130 discordant, 364327 orphans, 9583 too large [>5000 bp], 9290988 duplicates)
Reads: 76339684 total, 49977 skipped (flags/unmapped)
Fragments: 38343550 total (37906360 tlen-paired, 4791 hash-paired, 337 singletons, 12078 discordant, 419984 orphans, 11464 too large [>5000 bp], 10887753 duplicates)
Reads: 70478277 total, 46465 skipped (flags/unmapped)
Fragments: 35395665 total (35005557 tlen-paired, 3725 hash-paired, 397 singletons, 8329 discordant, 377657 orphans, 9268 too large [>5000 bp], 9787625 duplicates)
Reads: 77089619 total, 78237 skipped (flags/unmapped)
Fragments: 38894982 total (37683743 tlen-paired, 2947 hash-paired, 378 singletons, 235156 discordant, 972758 orphans, 97277 too large [>5000 bp], 11017236 duplicates)