Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_8D1-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_8D1-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_8D1-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8D1-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70188430 total, 42897 skipped (flags/unmapped)
Fragments: 35246346 total (34870263 tlen-paired, 2369 hash-paired, 475 singletons, 6985 discordant, 366254 orphans, 9785 too large [>5000 bp], 11124390 duplicates)
Reads: 66088995 total, 49962 skipped (flags/unmapped)
Fragments: 33188204 total (32822352 tlen-paired, 2736 hash-paired, 384 singletons, 9837 discordant, 352895 orphans, 7952 too large [>5000 bp], 10680976 duplicates)
Reads: 76696420 total, 44893 skipped (flags/unmapped)
Fragments: 38522968 total (38079797 tlen-paired, 2328 hash-paired, 399 singletons, 10836 discordant, 429608 orphans, 17799 too large [>5000 bp], 12470410 duplicates)
Reads: 77620398 total, 81851 skipped (flags/unmapped)
Fragments: 39154799 total (37943864 tlen-paired, 2914 hash-paired, 413 singletons, 236702 discordant, 970906 orphans, 100134 too large [>5000 bp], 12628929 duplicates)