Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FQY-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FQY-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FQY-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FQY-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75419865 total, 63366 skipped (flags/unmapped)
Fragments: 37790291 total (37529312 tlen-paired, 3338 hash-paired, 443 singletons, 11096 discordant, 246102 orphans, 11231 too large [>5000 bp], 10877487 duplicates)
Reads: 84198730 total, 54526 skipped (flags/unmapped)
Fragments: 42201905 total (41910618 tlen-paired, 3204 hash-paired, 476 singletons, 8535 discordant, 279072 orphans, 9971 too large [>5000 bp], 11965300 duplicates)
Reads: 80516755 total, 56624 skipped (flags/unmapped)
Fragments: 40357754 total (40046168 tlen-paired, 3138 hash-paired, 358 singletons, 10001 discordant, 298089 orphans, 21535 too large [>5000 bp], 11591754 duplicates)
Reads: 88013874 total, 88786 skipped (flags/unmapped)
Fragments: 44214555 total (43442358 tlen-paired, 2037 hash-paired, 392 singletons, 152480 discordant, 617288 orphans, 56829 too large [>5000 bp], 12697957 duplicates)