Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BF8C-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BF8C-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BF8C-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BF8C-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78753173 total, 65005 skipped (flags/unmapped)
Fragments: 39557630 total (39090133 tlen-paired, 4078 hash-paired, 462 singletons, 14079 discordant, 448878 orphans, 11124 too large [>5000 bp], 12926210 duplicates)
Reads: 82459004 total, 55646 skipped (flags/unmapped)
Fragments: 41419229 total (40947002 tlen-paired, 4099 hash-paired, 526 singletons, 9722 discordant, 457880 orphans, 11653 too large [>5000 bp], 13259773 duplicates)
Reads: 90702472 total, 61640 skipped (flags/unmapped)
Fragments: 45562509 total (45032660 tlen-paired, 3729 hash-paired, 451 singletons, 13318 discordant, 512351 orphans, 14308 too large [>5000 bp], 14934169 duplicates)
Reads: 92337882 total, 97653 skipped (flags/unmapped)
Fragments: 46596314 total (45094028 tlen-paired, 3973 hash-paired, 481 singletons, 294784 discordant, 1203048 orphans, 125565 too large [>5000 bp], 15195683 duplicates)