Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_4JL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_4JL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4JL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4JL-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68437813 total, 53499 skipped (flags/unmapped)
Fragments: 34366571 total (33986081 tlen-paired, 3008 hash-paired, 495 singletons, 11656 discordant, 365331 orphans, 8499 too large [>5000 bp], 10393187 duplicates)
Reads: 72250726 total, 48206 skipped (flags/unmapped)
Fragments: 36286337 total (35871206 tlen-paired, 3177 hash-paired, 416 singletons, 10124 discordant, 401414 orphans, 15838 too large [>5000 bp], 11035990 duplicates)
Reads: 73896167 total, 43591 skipped (flags/unmapped)
Fragments: 37111529 total (36715578 tlen-paired, 2025 hash-paired, 534 singletons, 8262 discordant, 385130 orphans, 7591 too large [>5000 bp], 10916861 duplicates)
Reads: 80387050 total, 79195 skipped (flags/unmapped)
Fragments: 40537193 total (39324166 tlen-paired, 2451 hash-paired, 457 singletons, 240525 discordant, 969594 orphans, 101760 too large [>5000 bp], 12266578 duplicates)