Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_1O-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_1O-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1O-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1O-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73364430 total, 50992 skipped (flags/unmapped)
Fragments: 36860567 total (36425787 tlen-paired, 2464 hash-paired, 436 singletons, 9802 discordant, 422078 orphans, 7409 too large [>5000 bp], 12309417 duplicates)
Reads: 77565266 total, 44928 skipped (flags/unmapped)
Fragments: 38974596 total (38520380 tlen-paired, 2331 hash-paired, 450 singletons, 6501 discordant, 444934 orphans, 8265 too large [>5000 bp], 12667194 duplicates)
Reads: 84867213 total, 49742 skipped (flags/unmapped)
Fragments: 42645035 total (42129247 tlen-paired, 4728 hash-paired, 408 singletons, 9673 discordant, 500979 orphans, 14394 too large [>5000 bp], 14245493 duplicates)
Reads: 86349324 total, 80225 skipped (flags/unmapped)
Fragments: 43613020 total (42113697 tlen-paired, 2429 hash-paired, 442 singletons, 295631 discordant, 1200821 orphans, 122161 too large [>5000 bp], 14498512 duplicates)