Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_KC-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_KC-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_KC-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_KC-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86314907 total, 62363 skipped (flags/unmapped)
Fragments: 43334129 total (42881772 tlen-paired, 3266 hash-paired, 521 singletons, 13177 discordant, 435393 orphans, 10100 too large [>5000 bp], 13795865 duplicates)
Reads: 91124276 total, 63398 skipped (flags/unmapped)
Fragments: 45750387 total (45253038 tlen-paired, 4963 hash-paired, 438 singletons, 11562 discordant, 480386 orphans, 20464 too large [>5000 bp], 14672138 duplicates)
Reads: 92356343 total, 53797 skipped (flags/unmapped)
Fragments: 46365297 total (45900452 tlen-paired, 4524 hash-paired, 574 singletons, 8937 discordant, 450810 orphans, 11668 too large [>5000 bp], 14514998 duplicates)
Reads: 101721984 total, 94184 skipped (flags/unmapped)
Fragments: 51268599 total (49820374 tlen-paired, 2824 hash-paired, 492 singletons, 292345 discordant, 1152564 orphans, 121829 too large [>5000 bp], 16359888 duplicates)