Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_U1V-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_U1V-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_U1V-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_U1V-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 103109354 total, 76767 skipped (flags/unmapped)
Fragments: 51793397 total (51183341 tlen-paired, 3949 hash-paired, 628 singletons, 18960 discordant, 586519 orphans, 16470 too large [>5000 bp], 17749944 duplicates)
Reads: 109480247 total, 66545 skipped (flags/unmapped)
Fragments: 54999569 total (54367990 tlen-paired, 4016 hash-paired, 663 singletons, 14203 discordant, 612697 orphans, 13962 too large [>5000 bp], 18416251 duplicates)
Reads: 108803002 total, 67555 skipped (flags/unmapped)
Fragments: 54661684 total (54002583 tlen-paired, 3268 hash-paired, 566 singletons, 16776 discordant, 638491 orphans, 25568 too large [>5000 bp], 18812622 duplicates)
Reads: 120985299 total, 112285 skipped (flags/unmapped)
Fragments: 61046871 total (59120397 tlen-paired, 1951 hash-paired, 668 singletons, 386455 discordant, 1537400 orphans, 158670 too large [>5000 bp], 20917760 duplicates)