Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_EI7-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EI7-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EI7-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EI7-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59958255 total, 41393 skipped (flags/unmapped)
Fragments: 30196099 total (29697679 tlen-paired, 2348 hash-paired, 384 singletons, 5544 discordant, 490144 orphans, 7596 too large [>5000 bp], 9487321 duplicates)
Reads: 59468838 total, 41931 skipped (flags/unmapped)
Fragments: 29952617 total (29433392 tlen-paired, 4441 hash-paired, 274 singletons, 6983 discordant, 507527 orphans, 14737 too large [>5000 bp], 9676671 duplicates)
Reads: 56136005 total, 46881 skipped (flags/unmapped)
Fragments: 28267566 total (27796603 tlen-paired, 2889 hash-paired, 328 singletons, 7838 discordant, 459908 orphans, 7114 too large [>5000 bp], 9143476 duplicates)
Reads: 66763276 total, 77047 skipped (flags/unmapped)
Fragments: 33863953 total (32199851 tlen-paired, 2836 hash-paired, 361 singletons, 340567 discordant, 1320338 orphans, 139511 too large [>5000 bp], 10813726 duplicates)