Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3BF-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3BF-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3BF-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3BF-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59063903 total, 48700 skipped (flags/unmapped)
Fragments: 29690859 total (29296777 tlen-paired, 2554 hash-paired, 379 singletons, 9293 discordant, 381856 orphans, 7860 too large [>5000 bp], 9989822 duplicates)
Reads: 62699524 total, 42811 skipped (flags/unmapped)
Fragments: 31519328 total (31109990 tlen-paired, 2521 hash-paired, 383 singletons, 6674 discordant, 399760 orphans, 9100 too large [>5000 bp], 10271423 duplicates)
Reads: 62522683 total, 43336 skipped (flags/unmapped)
Fragments: 31434336 total (31004111 tlen-paired, 2707 hash-paired, 322 singletons, 8153 discordant, 419043 orphans, 15020 too large [>5000 bp], 10547693 duplicates)
Reads: 69069716 total, 84399 skipped (flags/unmapped)
Fragments: 34906577 total (33590899 tlen-paired, 2189 hash-paired, 374 singletons, 263360 discordant, 1049755 orphans, 111146 too large [>5000 bp], 11617602 duplicates)