Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_8DJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_8DJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8DJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8DJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91235091 total, 61931 skipped (flags/unmapped)
Fragments: 45814374 total (45294152 tlen-paired, 5021 hash-paired, 564 singletons, 15301 discordant, 499336 orphans, 22156 too large [>5000 bp], 15254381 duplicates)
Reads: 86311941 total, 66807 skipped (flags/unmapped)
Fragments: 43338166 total (42865568 tlen-paired, 3053 hash-paired, 537 singletons, 17557 discordant, 451451 orphans, 10395 too large [>5000 bp], 14284290 duplicates)
Reads: 92170821 total, 58082 skipped (flags/unmapped)
Fragments: 46276534 total (45797759 tlen-paired, 3482 hash-paired, 568 singletons, 12348 discordant, 462377 orphans, 11308 too large [>5000 bp], 15001750 duplicates)
Reads: 100762382 total, 99877 skipped (flags/unmapped)
Fragments: 50782976 total (49361615 tlen-paired, 3392 hash-paired, 502 singletons, 278632 discordant, 1138835 orphans, 117945 too large [>5000 bp], 16928112 duplicates)