Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5NI-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5NI-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5NI-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5NI-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76924980 total, 41781 skipped (flags/unmapped)
Fragments: 38590929 total (38266267 tlen-paired, 2824 hash-paired, 557 singletons, 7003 discordant, 314278 orphans, 8088 too large [>5000 bp], 11527756 duplicates)
Reads: 76009558 total, 46559 skipped (flags/unmapped)
Fragments: 38134856 total (37783774 tlen-paired, 4785 hash-paired, 393 singletons, 9168 discordant, 336736 orphans, 15208 too large [>5000 bp], 11710780 duplicates)
Reads: 71731039 total, 50904 skipped (flags/unmapped)
Fragments: 35984653 total (35665755 tlen-paired, 3548 hash-paired, 402 singletons, 10325 discordant, 304623 orphans, 7927 too large [>5000 bp], 10970987 duplicates)
Reads: 84454762 total, 78470 skipped (flags/unmapped)
Fragments: 42497405 total (41508894 tlen-paired, 3059 hash-paired, 458 singletons, 197496 discordant, 787498 orphans, 84719 too large [>5000 bp], 13043472 duplicates)