Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7F2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7F2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7F2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7F2-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 56949305 total, 44795 skipped (flags/unmapped)
Fragments: 28611984 total (28264242 tlen-paired, 2903 hash-paired, 329 singletons, 10849 discordant, 333661 orphans, 7266 too large [>5000 bp], 8201067 duplicates)
Reads: 66181443 total, 42032 skipped (flags/unmapped)
Fragments: 33251030 total (32850694 tlen-paired, 4010 hash-paired, 325 singletons, 10939 discordant, 385062 orphans, 11369 too large [>5000 bp], 9568645 duplicates)
Reads: 60953293 total, 37482 skipped (flags/unmapped)
Fragments: 30624009 total (30267613 tlen-paired, 2191 hash-paired, 395 singletons, 7298 discordant, 346512 orphans, 7350 too large [>5000 bp], 8586738 duplicates)
Reads: 66963989 total, 65073 skipped (flags/unmapped)
Fragments: 33809967 total (32689236 tlen-paired, 1811 hash-paired, 359 singletons, 217318 discordant, 901243 orphans, 90292 too large [>5000 bp], 9688577 duplicates)