Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_MUC-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_MUC-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_MUC-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_MUC-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91079994 total, 70356 skipped (flags/unmapped)
Fragments: 45784496 total (45174875 tlen-paired, 3683 hash-paired, 596 singletons, 17518 discordant, 587824 orphans, 14533 too large [>5000 bp], 15043539 duplicates)
Reads: 96706109 total, 58330 skipped (flags/unmapped)
Fragments: 48616881 total (47991488 tlen-paired, 3268 hash-paired, 675 singletons, 12138 discordant, 609312 orphans, 12002 too large [>5000 bp], 15712778 duplicates)
Reads: 105496491 total, 64488 skipped (flags/unmapped)
Fragments: 53041176 total (52321132 tlen-paired, 6762 hash-paired, 537 singletons, 17845 discordant, 694900 orphans, 22544 too large [>5000 bp], 17526955 duplicates)
Reads: 107340132 total, 104333 skipped (flags/unmapped)
Fragments: 54260873 total (52255736 tlen-paired, 2977 hash-paired, 587 singletons, 392553 discordant, 1609020 orphans, 161830 too large [>5000 bp], 17814725 duplicates)