Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_de0-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_de0-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_de0-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_de0-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92637066 total, 70381 skipped (flags/unmapped)
Fragments: 46483589 total (46046391 tlen-paired, 4679 hash-paired, 540 singletons, 13552 discordant, 418427 orphans, 9237 too large [>5000 bp], 14955868 duplicates)
Reads: 98132121 total, 58592 skipped (flags/unmapped)
Fragments: 49238997 total (48798586 tlen-paired, 4395 hash-paired, 625 singletons, 9103 discordant, 426288 orphans, 11224 too large [>5000 bp], 15604489 duplicates)
Reads: 107747283 total, 65954 skipped (flags/unmapped)
Fragments: 54066689 total (53571012 tlen-paired, 5620 hash-paired, 579 singletons, 13742 discordant, 475736 orphans, 12133 too large [>5000 bp], 17544266 duplicates)
Reads: 108441632 total, 102972 skipped (flags/unmapped)
Fragments: 54614626 total (53219700 tlen-paired, 2919 hash-paired, 611 singletons, 271265 discordant, 1120131 orphans, 115075 too large [>5000 bp], 17673504 duplicates)