Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_dhR-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_dhR-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dhR-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dhR-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70736621 total, 55719 skipped (flags/unmapped)
Fragments: 35489082 total (35162362 tlen-paired, 2461 hash-paired, 432 singletons, 11135 discordant, 312692 orphans, 7931 too large [>5000 bp], 10514139 duplicates)
Reads: 75948981 total, 49732 skipped (flags/unmapped)
Fragments: 38102843 total (37765254 tlen-paired, 4595 hash-paired, 452 singletons, 7471 discordant, 325071 orphans, 9543 too large [>5000 bp], 11071918 duplicates)
Reads: 81913156 total, 53236 skipped (flags/unmapped)
Fragments: 41101992 total (40708864 tlen-paired, 4063 hash-paired, 408 singletons, 10979 discordant, 377678 orphans, 17011 too large [>5000 bp], 12236139 duplicates)
Reads: 82781282 total, 80906 skipped (flags/unmapped)
Fragments: 41679907 total (40654749 tlen-paired, 2740 hash-paired, 462 singletons, 198852 discordant, 823104 orphans, 82064 too large [>5000 bp], 12412904 duplicates)