Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_Jq-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Jq-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Jq-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Jq-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70469287 total, 53754 skipped (flags/unmapped)
Fragments: 35351375 total (35030333 tlen-paired, 3408 hash-paired, 370 singletons, 11469 discordant, 305795 orphans, 9474 too large [>5000 bp], 10701182 duplicates)
Reads: 74321138 total, 42971 skipped (flags/unmapped)
Fragments: 37286868 total (36965376 tlen-paired, 2738 hash-paired, 402 singletons, 7649 discordant, 310703 orphans, 7768 too large [>5000 bp], 11055006 duplicates)
Reads: 81293462 total, 50250 skipped (flags/unmapped)
Fragments: 40784763 total (40398852 tlen-paired, 3837 hash-paired, 345 singletons, 11880 discordant, 369849 orphans, 21940 too large [>5000 bp], 12417083 duplicates)
Reads: 82050113 total, 80388 skipped (flags/unmapped)
Fragments: 41297256 total (40318110 tlen-paired, 2711 hash-paired, 423 singletons, 187910 discordant, 788102 orphans, 81869 too large [>5000 bp], 12559887 duplicates)